BtaEX6010720 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005408 | CLK1
Description
CDC-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:2068]
Coordinates
chr2:89926175-89927819:-
Coord C1 exon
chr2:89927748-89927819
Coord A exon
chr2:89926652-89926815
Coord C2 exon
chr2:89926175-89926403
Length
164 bp
Sequences
Splice sites
3' ss Seq
AAAACTTGTTTTTTATGTAGATG
3' ss Score
6.14
5' ss Seq
TAGGTAAGG
5' ss Score
9.31
Exon sequences
Seq C1 exon
AGCGAGCTGGTTTTTTTCCGTGGTTGTGTTGCAAGCATTGCCTCCTTAGGCTTGGACTCTTTGGCCAACACG
Seq A exon
ATGAGACACTCAAAAAGAAGTTACTGTCCTGATTGGGATGAAAAAGATTGGGATTATGGAAAATGGAAGAGCAGCAGCGGCAGTCATAAAAGAAAGAAGAGATCGCATAGCAGTGCACGGGAGAACAAGCGCTGCAGATACAATTACTCTAAAACATCTGATAG
Seq C2 exon
CTATTACCTGGAAAGCAGATCCTTAAATGAGAAAGATTATCATAGTCGACGCTACATTGATGAATACAGAAATGACTACAGTCAAGGATGTGAACCTGGACATCGACATAAAGATTATGAAAGCAGATATCAGAACCATAGTAGCAAGTCCTCTGGTAGAAGTGGAAGAAGTAGTTATAAAAGCAAACACAGAATTCACGACAGCACTTCATATCATTGTTCACATGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005408-'2-1,'2-0,7-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.345 C2=0.753
Domain overlap (PFAM):
C1:
NA
A:
PF105774=UPF0560=PU(26.4=87.3)
C2:
PF105774=UPF0560=FE(41.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCTTAGGCTTGGACTCTT
R:
TGAAGTGCTGTCGTGAATTCTGT
Band lengths:
243-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]