BtaEX6077627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007304 | CLK3
Description
Bos taurus CDC-like kinase 3 (CLK3), mRNA. [Source:RefSeq mRNA;Acc:NM_001034248]
Coordinates
chr21:34447433-34452116:-
Coord C1 exon
chr21:34452044-34452116
Coord A exon
chr21:34448306-34448457
Coord C2 exon
chr21:34447433-34447649
Length
152 bp
Sequences
Splice sites
3' ss Seq
TTTCTGTTTCTGCGGCCTAGATG
3' ss Score
6.89
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GGCCTAGCAGCAGCCTGAGCCTGGGAGACCGTGAGTGTGGGGCCCGGGCCCGCGACGGGAGCAGTGGCGGGCG
Seq A exon
ATGCATCACTGTAAGCGATACCGCTCCCCTGAGCCAGACCCGTACCTGAGCTACCGATGGAAGAGGAGGAGGTCTTACAGTCGGGAGCACGAAGGGAGATTGCGATACCCGTCTCGAAGGGAGCCGCCGCCACGGAGATCTCGGTCTAGAAG
Seq C2 exon
CCATGACCGCTTGCCCTACCAGAGGAGATACCGGGAGCACCGTGACAGCGACACATACCGGTGTGAAGACCGGAGCCCATCCTTTGGGGAGGACTACTACGGATCTTCACGTTGCCATCATCGTCGGCGATCACGGGAGAGGGAGCCATACCGGACCCGCAAGCACGCCCACCACTGCCACAAACGCCGCACCAGGTCTTGTAGCAGCGCCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007304-'1-4,'1-1,9-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.608 C2=0.753
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCGTGAGTGTGGGG
R:
CTGCTACAAGACCTGGTGCG
Band lengths:
257-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]