GgaEX1015766 @ galGal4
Exon Skipping
Gene
ENSGALG00000001362 | CLK3
Description
dual specificity protein kinase CLK3 [Source:RefSeq peptide;Acc:NP_001012542]
Coordinates
chr10:1980605-1986178:-
Coord C1 exon
chr10:1982354-1986178
Coord A exon
chr10:1981996-1982144
Coord C2 exon
chr10:1980605-1980818
Length
149 bp
Sequences
Splice sites
3' ss Seq
CGCGCCCGTTGTGCCCGCAGATG
3' ss Score
12.53
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
GAAAATGTGATAGCCTAGGCGGTGGATAAATACCTCAACGTCTCCTTCCAACAAGTGTCTGTATATGTTGTTGTTGGGTTTTTTCTATCTTACACGTTATCTGAATGTTTATATTCCAATAAACTTCTACCTCTTCACACGGCGACCCAACAGCCTCTTTGGGGGCAGCGCTGGCGGGCGGGGGGGGATCGGCCCCTGGGATGGGGTGGGCCGTGCTGGGCGAGCCGGGGGGGCCGCAGACGCTCGGGGGGGTTTCAGCCCAAAGATTCCCTCTTGGGAGGGGTCCTCAGCCCCGTGCTCAGCAGCCTCCCGCAGCTCCTCCTCGGCGCGCAAGGGGTTAACCTCCGGGCCACAGAGAGGGGCGGCTAGAGCGGCGCGGCGGGGGGGGCGGGGGCGAGCGGCGGAAGCGGAAGTGGGGGCAGAGCGGGAGCGGAGGCGCTGCTGGGCCGGGCCGGGCCGAGCCGGGCCGCACCCTCCGAACGCTGAGGGGCCGAGGGGCG
Seq A exon
ATGCACCACTGCAAGAGGTACCGCTCCCCGGAGCAGGAGGCCTGCTGGGGCCCGCGCTGGAAGAGGAAGCGTTCCCGGAGCAGGGCCTACGAGGGCCGCCCGCGCTGCCCGCCCCGCAGGGACCTGCCCAGGAGGTCGCGATCCAGGAG
Seq C2 exon
CCATGACAGGATGCCTTATCACAGGAGATACAGAGACCGACGGGACAGCGACGCCTACAGATTCGAAGAGCGGAGCCCGTCCTTCGACGACGACTATTACTCGACCCGCACGCGGCACTGGCGGCGATCCCGGGACAGAGAGCAGTACTATGACAGGAAGCACCAGCACTACTGCAGGAAACGCAGGACCAGGTCTTGTAGCAGTGCCTCCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001362_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.540 C2=0.444
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCAAGGGGTTAACCTCC
R:
CCGCTCTTCGAATCTGTAGGC
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]