MmuEX6067456 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79700257-79703462:-
Coord C1 exon
chr9:79703298-79703462
Coord A exon
chr9:79702226-79702399
Coord C2 exon
chr9:79700257-79700547
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTTTTGTTTTTAAGGCA
3' ss Score
9.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGATGCCATTGATTACTTAGTTAAAAACACTTTTACTGAATCTGCTGGCTCACGAGCTGGCTTTCCTAAAGTGGCAATTATTATCACGGACGGCAAGTCTCAGGACGAAGTGGAAATTCCAGCGCGGGAGCTTCGGAATATTGGAGTTGAGGTTTTCTCTCTGG
Seq A exon
GCATTAAAGCTGCAGATGCAAAAGAACTCAAACAAATTGCATCCACACCTTCCCTGAACCATGTGTTCAATGTGGCCAATTTTGATGCAATTGTGGACATCCAGAATGAGATAATCTCGCAGGTGTGTTCAGGAGTTGATGAGCAGCTTGGTGAGCTGGTCAGTGGAGAAGAAG
Seq C2 exon
TCATCGAGCCTCCTTCAAATCTGGTAGTCACTGAACTCTCATCAAAATACATTAGGCTGAGCTGGGATCCGTCTCCCAGCGCTGTGACCGGCTATAAGATCCTCCTCACACCAATGGCAGCGGGAAGCCGGCATCACGCTTTGAGTGTGGGGCCCCAGACGACCACGCTCAATGTTCGTGACCTTACAGCGGACACGGAGTACCAGATCAGCGTTTTTGCCATGAAGGGCCTGACGTCCAGTGAACCCACTTCGGTCATGGAGAAGACGCAGCCAATGAAAGTTCAAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'11-9,'11-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.092
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=62.7)
C2:
PF0004116=fn3=WD(100=83.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATCTGCTGGCTCACGAG
R:
GCCATTGGTGTGAGGAGGATC
Band lengths:
247-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types