RnoEX6036657 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87139581-87143078:-
Coord C1 exon
chr8:87142914-87143078
Coord A exon
chr8:87141735-87141908
Coord C2 exon
chr8:87139581-87139871
Length
174 bp
Sequences
Splice sites
3' ss Seq
CCCACCCTTTTGTTTTTAAGGCA
3' ss Score
9.01
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGGATGCCATTGACTACTTAGTCAAAAACACTTTCACTGAGTCTGCTGGCTCAAGAGCTGGCTTTCCTAAAGTGGCGATCATTATCACGGATGGCAAGTCTCAGGATGAAGTAGAAATTCCAGCACGGGAACTTCGGAATATTGGAGTTGAGGTTTTCTCTCTGG
Seq A exon
GCATTAAAGCTGCAGATGCAAAAGAACTCAAACAAATTGCATCCACACCTTCCCTGAACCACGTGTTCAATGTGGCCAATTTTGATGCAATCGTGGACATTCAGAATGAGATAATCTCCCAGGTGTGTTCAGGAGTTGATGAGCAACTTGGTGAGCTGGTCAGTGGAGAAGAAG
Seq C2 exon
TCATCGAGCCTCCTTCAAATCTGGTAGTCACAGATCTCTCATCAAAATTCATTAGGCTGAGATGGGATCCGTCTCCCAGCGCTGTGACTGGCTATAAGATCCTCCTCACACCAATGGCTGCCGGGAGCCGCCATCACGCTTTGAGTGTGGGGCCCCAGACGACCACGCTCAATGTTCGTGACCTTTCAGCTGACACAGAATACCAGATCAGCGTTTTTGCCATGAAGGGGCTAACATCCAGTGAGCCTGTTTCAGTCATGGAGAAGACACAGCCAATGAAAGTTCAAGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'15-14,'15-12,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.034 C2=0.010
Domain overlap (PFAM):
C1:
PF0009223=VWA=FE(31.8=100)
A:
PF0009223=VWA=PD(21.4=62.7)
C2:
PF0004116=fn3=WD(100=82.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGAGTCTGCTGGCTCAAG
R:
AGCCATTGGTGTGAGGAGGAT
Band lengths:
250-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]