MmuEX6067459 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79693364-79698832:-
Coord C1 exon
chr9:79698732-79698832
Coord A exon
chr9:79697401-79697673
Coord C2 exon
chr9:79693364-79693636
Length
273 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTTCTTTTAAACAGCTT
3' ss Score
9.51
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
TCTGGGTCCTTTGAACCCAAAGCAACTAAAAGTGTTGGAACTTTGAATTCTTTTTGTGTATTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
Seq A exon
CTTACGTTCCACCAAAGGATCTGAGGTTTACTCAGGTAACTGCTAATAGTTTCAAAGCTGAATGGTCTCCTCCTGGAGACAATGTCTTTTCGTATCACGTCACATACAAGGATGCTAATGGTGATGATGAGGTCACAGTGGTGGAGCCAGCCTCCAGCACTAGTGTTGTTCTCAACAACCTGAGGCCAGAAACCCTGTACTTGGTGAATGTGACAGCCGAGTATGAGGACGGCTTCAGTGTTCCTATAACTGGGGAGGAGACCACTGCAGAAG
Seq C2 exon
TAAAAGGAGTTCCACGAAACCTGAAGGTGACAGATGAGACTACGGACAGTTTTAAACTTACCTGGTCCCAAGCTCCAGGGAGAGTCTTAAGGTATCGGATTAGATACAGACCAGTTTCTGGTGGAGAAAGCAAAGAAGTGAGTACCCCAGCCAATCAGAGGAGGAAAACACTGGAGAATCTGACGCCCGACACAAAATATGAAATATCTGTGATTGCTGAATATTCCTCGGGACCTGGATCTCCACTGACAGGAAATGCAGCCACTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'18-14,'18-13,19-14
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.196 C2=0.554
Domain overlap (PFAM):
C1:
NA
A:
PF0004116=fn3=WD(100=87.0)
C2:
PF0004116=fn3=WD(100=89.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACCCAAAGCAACTAAAAGTGT
R:
TCATATTTTGTGTCGGGCGTCA
Band lengths:
292-565
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types