RnoEX0022793 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87132938-87139159:-
Coord C1 exon
chr8:87138557-87139159
Coord A exon
chr8:87136377-87136649
Coord C2 exon
chr8:87132938-87133210
Length
273 bp
Sequences
Splice sites
3' ss Seq
TCTTTTTTCCTTTTAAACAGCTT
3' ss Score
9.57
5' ss Seq
AAGGTACGG
5' ss Score
10.26
Exon sequences
Seq C1 exon
AGTTCTTGCAAAAAGTTTTGAGATTTCTCCAAACAGGGTGCAGATAAGCCTTGTCCAGTACAGCAGAGACCCTCACACTGAATTTACATTGAAGGAGTTTAACAGAGTTGAAGACATAATCAAAGCAATAAATAACTTCCCGTACAGGGGAGGATCCACAAACACAGGCAAAGCAATGACTTACGTCAGAGAGAAAATATTTGTGCCTAACAAAGGCTCCAGAAGCAACGTACCAAAGGTGATGATTCTCATCACAGATGGGAAGTCGTCAGATGCTTTCAGGGACCCTGCTATAAAACTCAGGAACTCGGACGTGGAGATCTTCGCAGTTGGTGTAAAGGATGCTGTGCGCTCAGAACTGGAAGCCATTGCCTCTCCTCCCGCTGAGACACATGTGTTCACAGTGGAGGACTTCGATGCCTTTCAGAGGATATCGTTTGAACTCACACAGTCTATCTGTCTTAGAATTGAGCAAGAGTTGGCAGCTATAAAGAAGAAAG
Seq A exon
CTTATGTGCCGCCAAAGGATCTGAGATTTACTCAGGTAACTGCTAATAGTTTCAAAGCTGAATGGTCTCCTGCTGGAGACAACGTCTTCTCGTATCACATCACGTACAAGGACACTACTGGTGACGATGAGGTCACAGTGGTGGAGCCAGCCTCCAGCACCAGTGTTGTTCTCAGCAACCTGAAACCAGAGACCCTGTACTTGGTGAATGTGACGGCAGAGTATGAGGATGGCTTCAGCGTCCCTGTAGTTGGGGAGGAGACCACGGCTGAAG
Seq C2 exon
TAAAAGGAGCACCACGAAACCTGAAGGTGACTGATGAGACGACGGACAGTTTTAAAATTACCTGGTCTCAAGCTCCAGGGAGAGTCTTAAGGTACCGAATTATGTACAGACCAGTTTCTGGTGGAGAAAGTAAAGAAGTCAGTACTCCAGCCAACCAGAGGAGGAAAACACTGGAGAACCTGACGCCAGACACAAAGTATGAAATATCTGTAATTGCTGAATATTCATCCGGACCTGGCTCTCCACTGACAGGAAGTGCAGCCACTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'21-18,'21-17,22-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.130 C2=0.522
Domain overlap (PFAM):
C1:
PF0009223=VWA=WD(100=87.6)
A:
PF0004116=fn3=WD(100=87.0)
C2:
PF0004116=fn3=WD(100=89.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACAGTGGAGGACTTCGATGC
R:
TTTGTGTCTGGCGTCAGGTTC
Band lengths:
297-570
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]