MmuEX6067460 @ mm9

Exon Skipping

Gene

ENSMUSG00000032332 | Col12a1

Description

collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]

Coordinates

chr9:79532001-79541443:-

Coord C1 exon

chr9:79541171-79541443

Coord A exon

chr9:79539967-79540239

Coord C2 exon

chr9:79532001-79532273

Length

273 bp

Sequences

Splice sites

3' ss Seq

TTTTTTTTGTAAAAATAAAGTTA

3' ss Score

0.41

5' ss Seq

AAGGTAATT

5' ss Score

8.83

Exon sequences

Seq C1 exon

TAAAAGGAGTTCCACGAAACCTGAAGGTGACAGATGAGACTACGGACAGTTTTAAACTTACCTGGTCCCAAGCTCCAGGGAGAGTCTTAAGGTATCGGATTAGATACAGACCAGTTTCTGGTGGAGAAAGCAAAGAAGTGAGTACCCCAGCCAATCAGAGGAGGAAAACACTGGAGAATCTGACGCCCGACACAAAATATGAAATATCTGTGATTGCTGAATATTCCTCGGGACCTGGATCTCCACTGACAGGAAATGCAGCCACTGAAGAAG

Seq A exon

TTAGAGGGAATCCAAGAGACCTAAGAGTTTCTGATGCTACGACATCAACGCTGAAGTTGTCTTGGAGTAGGGCACCAGGAAAGGTGAAGCAATATCTTGTCACATACACCCCAGCAGCAGGAGGTGAAACTCAGGAGGTCACTGTGAGAGGAGATACAACCACTACCATGTTGAGGAAATTGAAGGAAGGGACACAGTATGACTTATCTGTGACAGCACTGTATGCGTCTGGGGCTGGCGAAGCCCTTTCTGGAAAAGGATCAACTCTTGAAG

Seq C2 exon

AACGTGGCTCACCTCAGAACCTAGTTACCAAAGACATCACAGACACATCAATCGGAGCCTATTGGACATCTGCCCCAGGGATGGTTCGAGGGTACAGGGTCTCATGGAAATCGCTTTACGACGACATTGAGGCTGGAGAGACAACTCTTCCTGGAGATGCAATTCATACTATGATAGAGAACCTGCAGCCAGAGACCAAGTACAAAATTTCAGTTTTCGCAACTTACAGCAGTGGAGAAGGAGAGCCCGTGACCGGAGATGCCACAACTGAAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000032332-'14-13,'14-12,15-13=AN

Average complexity

A_S

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features