RnoEX0022795 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87122797-87133210:-
Coord C1 exon
chr8:87132938-87133210
Coord A exon
chr8:87132179-87132451
Coord C2 exon
chr8:87122797-87123069
Length
273 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTCTTTTAAATAAAGTTA
3' ss Score
2.88
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TAAAAGGAGCACCACGAAACCTGAAGGTGACTGATGAGACGACGGACAGTTTTAAAATTACCTGGTCTCAAGCTCCAGGGAGAGTCTTAAGGTACCGAATTATGTACAGACCAGTTTCTGGTGGAGAAAGTAAAGAAGTCAGTACTCCAGCCAACCAGAGGAGGAAAACACTGGAGAACCTGACGCCAGACACAAAGTATGAAATATCTGTAATTGCTGAATATTCATCCGGACCTGGCTCTCCACTGACAGGAAGTGCAGCCACTGAAGAAG
Seq A exon
TTAGAGGGAATCCAAGAGACTTAAGAGTTTCTGATGCCACGACATCAACGCTGAAGTTGACTTGGAGTGGGGCCCCAGGAAAAGTGAAGCAGTATCTTGTCACATACACCCCAGCAGCAGGAGGTGAAACTCAGGAGGTCACTGTGAGAGGGGATACAACCACCACGGTGTTGAGGAACTTGAAGGAAGGGACACAGTACGACTTATCTGTGACAGCACTGTATGCGTCTGGGGCTGGTGAGGCCCTTTCTGGAAAAGGGACAACACTTGAAG
Seq C2 exon
AACGTGGTTCACCTCAAAATCTAGTTACCAAAGACATCACAGACACATCAATCGGGGCCTATTGGACATCTGCTCCAGGGATGGTTCGAGGGTACAGGGTCTCATGGAAGTCGCTTTATGACGATATTGAGGCCGGAGAGAAAACTCTTCCTGGAGATGCAATTCACACTATGATTGAGAATCTGCAGCCAGAGACCAAGTACAAAATTTCAGTTTTTGCAACTTACAGCAGTGGAGAAGGAGAGCCGGTGACTGGAGATGCCACAACTGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'23-27,'23-21,24-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.478 C2=0.304
Domain overlap (PFAM):
C1:
PF0004116=fn3=WD(100=89.1)
A:
PF0004116=fn3=WD(100=87.0)
C2:
PF0004116=fn3=WD(100=88.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAAGCTCCAGGGAGAGT
R:
CTGTACCCTCGAACCATCCCT
Band lengths:
306-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]