MmuEX6067464 @ mm9
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79526268-79529388:-
Coord C1 exon
chr9:79529196-79529388
Coord A exon
chr9:79528100-79528221
Coord C2 exon
chr9:79526268-79526417
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGCATATCACTATTTCAGGGC
3' ss Score
8.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CGTCTCGATTTAAATCGCCGAGAAACCTCAAAACTTCTGACCCAACCATGTCAAGTTTCAGAGTGACTTGGGAGCCTGCCCCTGGGGAAGTGAAAGGTTACAAAGTCACATTCCACCCTACAGGCGATGACAGAAGACTTGGGGAGTTGGTCCTTGGACCATATGACAACACAGTTGTCTTGGAGGAGCTTAG
Seq A exon
GGCAGGCACCACCTATAGAGTCAATGTTTTTGGGATGTTTGATGGAGGAGAAAGTTTACCACTCGTTGGGCAAGAAATGACAACTCTTTCTGACACAACTGTGACACCATTTCTATCTTCTG
Seq C2 exon
GGATGGATTGTCTCACCAGAGCTGAAGCAGACATTGTGTTGCTGGTGGATGGGTCATGGAGCATCGGCCGTGCAAATTTTAGAACTGTGCGAAGCTTCATTTCTCGTATTGTAGAAGTCTTTGAAATTGGCCCCAAAAGAGTACAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(74.1=92.3)
A:
PF0004116=fn3=PD(24.7=47.6)
C2:
PF0009223=VWA=PU(23.1=78.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCGAGAAACCTCAAAACT
R:
GATGCTCCATGACCCATCCAC
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: