RnoEX0022799 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87115859-87118962:-
Coord C1 exon
chr8:87118770-87118962
Coord A exon
chr8:87117721-87117842
Coord C2 exon
chr8:87115859-87116008
Length
122 bp
Sequences
Splice sites
3' ss Seq
ACTGCCTGTTACTGTTTCAGGGC
3' ss Score
11.38
5' ss Seq
CCGGTAAGA
5' ss Score
10.1
Exon sequences
Seq C1 exon
CTTCTCGATTTAAATCGCCGAGAAACCTCAAAACTTCTGACCCAACAATGTCAAGTTTCCGAGTGACTTGGGAGCCTGCCCCTGGGGAAGTGAAAGGTTACAAAGTCACCTTTCACCCTACAGGTGACGACAGAAGACTTGGGGAGTTGGTCCTTGGACCATATGACAACACAGTTGTCTTGGAGGAGCTTAG
Seq A exon
GGCAGGCACTACATATAGAGTCAATGTTTTTGGGATGTTCGATGGAGGAGAAAGTTTACCACTTGTTGGGCAGGAAATGACAACCCTTTCTGACACAACTGTGACACCATTTCTATCTTCCG
Seq C2 exon
GGATGGAATGTCTCACCAGAGCTGAAGCAGACATTGTGTTGCTGGTGGATGGGTCATGGAGCATTGGCCGCGCAAATTTTAGAACTGTGCGAAGCTTCATCTCTCGTATCGTGGAAGTCTTTGAAATCGGCCCCAAGAGAGTACAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'29-36,'29-32,30-36
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(74.1=92.3)
A:
PF0004116=fn3=PD(24.7=47.6)
C2:
PF0009223=VWA=PU(23.1=78.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCGAGTGACTTGGGAGC
R:
ACGAGAGATGAAGCTTCGCAC
Band lengths:
246-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]