MmuEX6067464 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79678461-79681581:-
Coord C1 exon
chr9:79681389-79681581
Coord A exon
chr9:79680293-79680414
Coord C2 exon
chr9:79678461-79678610
Length
122 bp
Sequences
Splice sites
3' ss Seq
TCTGCATATCACTATTTCAGGGC
3' ss Score
8.72
5' ss Seq
CTGGTAAGA
5' ss Score
9.45
Exon sequences
Seq C1 exon
CGTCTCGATTTAAATCGCCGAGAAACCTCAAAACTTCTGACCCAACCATGTCAAGTTTCAGAGTGACTTGGGAGCCTGCCCCTGGGGAAGTGAAAGGTTACAAAGTCACATTCCACCCTACAGGCGATGACAGAAGACTTGGGGAGTTGGTCCTTGGACCATATGACAACACAGTTGTCTTGGAGGAGCTTAG
Seq A exon
GGCAGGCACCACCTATAGAGTCAATGTTTTTGGGATGTTTGATGGAGGAGAAAGTTTACCACTCGTTGGGCAAGAAATGACAACTCTTTCTGACACAACTGTGACACCATTTCTATCTTCTG
Seq C2 exon
GGATGGATTGTCTCACCAGAGCTGAAGCAGACATTGTGTTGCTGGTGGATGGGTCATGGAGCATCGGCCGTGCAAATTTTAGAACTGTGCGAAGCTTCATTTCTCGTATTGTAGAAGTCTTTGAAATTGGCCCCAAAAGAGTACAAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'28-24,'28-21,29-24
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.385 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF0004116=fn3=PU(74.1=92.3)
A:
PF0004116=fn3=PD(24.7=47.6)
C2:
PF0009223=VWA=PU(23.1=78.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCGAGAAACCTCAAAACT
R:
GATGCTCCATGACCCATCCAC
Band lengths:
244-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types