MmuEX6067497 @ mm9
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79465501-79474905:-
Coord C1 exon
chr9:79474796-79474905
Coord A exon
chr9:79467748-79467897
Coord C2 exon
chr9:79465501-79465578
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAGATTACTTATCTTTTTAGGTC
3' ss Score
8.12
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTTCCAGCAAGACACTATCTTTCTTTAATAAGGATACAAGAGGGGAGGTACAAACTGTTACATTTGACACAGATGAAGTGAAGACATTATTTTATGGAAGCTTTCATAAG
Seq A exon
GTCCATATTGTAGTGACCTCAAAGAGTGTTAAGATTTATATTGACTGCTATGAAATTATAGAAAAAGACATCAAAGAAGCTGGAAATATAACAACTGATGGCTACGAAATTCTTGGAAAACTTCTTAAAGGAGAGAGGAAGTCAGCCACA
Seq C2 exon
TTCCAAATCCAGAGCTTTGACATTGTCTGCAGCCCAGTGTGGACCAGTAGAGACAGATGCTGTGATATTCCCTCTAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'54-52,'54-51,55-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF079537=Toxin_R_bind_N=PU(35.4=94.6)
A:
PF079537=Toxin_R_bind_N=FE(49.5=100)
C2:
PF079537=Toxin_R_bind_N=PD(12.1=46.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGCAAGACACTATCTTTCT
R:
CCTAGAGGGAATATCACAGCATCTG
Band lengths:
188-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: