BtaEX6048045 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020056 | COL12A1
Description
collagen, type XII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2188]
Coordinates
chr9:14890957-14898921:-
Coord C1 exon
chr9:14898812-14898921
Coord A exon
chr9:14893046-14893195
Coord C2 exon
chr9:14890957-14891034
Length
150 bp
Sequences
Splice sites
3' ss Seq
GAAACGAATGATCTTTTTAGGTT
3' ss Score
4.72
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTTCTAGCAAGACATTATCATTCTTTAACAAGGATACAAGAGGTGAGGTGCAGACTGTTACATTTGACACAGATGAAGTGAAGGCATTATTTTATGGAAGTTTTCATAAG
Seq A exon
GTTCATATCGTAGTGACCTCGAAAAGTGTTAAGATTTACATCGACTGCTATGAGATTGTAGAGAAGGATATCAAGGAAGCTGGAAATATCACCACTGACGGTTACGAAATTCTTGGAAAACTGCTTAAAGGGGAGAGGAAGTCAGCCACA
Seq C2 exon
TTCCAAATCCAGAATTTTGATATTGTCTGCAGTCCGGTGTGGACCAGTAGAGACAGATGCTGTGATATTCCCTCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020056-'51-57,'51-56,52-57=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF079537=Toxin_R_bind_N=PU(35.4=94.6)
A:
PF079537=Toxin_R_bind_N=FE(49.5=100)
C2:
PF079537=Toxin_R_bind_N=PD(12.1=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTTTAACAAGGATACAAGAGGT
R:
TCTGGAGGGAATATCACAGCA
Band lengths:
170-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]