RnoEX0022815 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87061092-87069119:-
Coord C1 exon
chr8:87069010-87069119
Coord A exon
chr8:87062623-87062772
Coord C2 exon
chr8:87061092-87061169
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAAATTAATTATCTTTTTAGGTC
3' ss Score
8.13
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
CTTCTAGCAAGACACTGTCTTTCTTTAATAAGGATACAAGAGGCGAGGTACAGACTGTTACATTTGATGCAGATGAAGCGAAGACCTTGTTTTATGGAAGCTTTCATAAG
Seq A exon
GTCCATATTGTAGTGACCTCAAAGAGTGTTAAGATTTATATTGACTGCTATGAAATTGTAGAAAAAGACATCAAAGAAGCTGGAAATATAACAACTGATGGCTATGAAATTCTTGGAAAACTTCTTAAAGGAGAGAGGAAATCAGCCACA
Seq C2 exon
TTCCAAATCCAGAGCTTTGACATTATCTGCAGCCCAGTGTGGACCAGTAGAGACAGATGCTGTGATATTCCCTCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'71-80,'71-78,73-80
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.038
Domain overlap (PFAM):
C1:
PF079537=Toxin_R_bind_N=PU(35.4=94.6)
A:
PF079537=Toxin_R_bind_N=FE(49.5=100)
C2:
PF079537=Toxin_R_bind_N=PD(12.1=46.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATAAGGATACAAGAGGCGAGGT
R:
CGAGAGGGAATATCACAGCATCTG
Band lengths:
162-312
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]