MmuEX6068667 @ mm9
Exon Skipping
Gene
ENSMUSG00000057969 | Sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:MGI Symbol;Acc:MGI:107561]
Coordinates
chr9:107502134-107502702:-
Coord C1 exon
chr9:107502661-107502702
Coord A exon
chr9:107502281-107502438
Coord C2 exon
chr9:107502134-107502189
Length
158 bp
Sequences
Splice sites
3' ss Seq
GAGACTCTTGTGCCCTCTAGCAA
3' ss Score
4.56
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACTCTGCCGCTATCACCAGCATGCAAATCTCCTCTAAAAGG
Seq A exon
CAACAACTCTACATAGCATCGCGCAGCGCAGTGGCCCAGATTGCTTTGCATCGCTGCACTGCCCTAGGCCGCGCCTGCGCAGAATGCTGCTTGGCCCGTGATCCTTACTGCGCCTGGGATGGATCAGCTTGCACACGCTTCCAGCCTACGGCCAAGAG
Seq C2 exon
ACGGTTCCGGAGGCAAGACATAAGGAATGGCGACCCCAGCACCCTATGCTCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057969-'23-29,'23-27,24-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(54.7=66.0)
C2:
PF0143720=PSI=FE(29.7=100),PF0768612=V-set=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGCCGCTATCACCAG
R:
CATAGGGTGCTGGGGTCGC
Band lengths:
90-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: