RnoEX6037478 @ rn6
Exon Skipping
Gene
ENSRNOG00000016512 | Sema3b
Description
semaphorin 3B [Source:RGD Symbol;Acc:1310079]
Coordinates
chr8:116355276-116355859:-
Coord C1 exon
chr8:116355818-116355859
Coord A exon
chr8:116355437-116355594
Coord C2 exon
chr8:116355276-116355331
Length
158 bp
Sequences
Splice sites
3' ss Seq
GAGACTCTTGTGCCCTTTAGCAC
3' ss Score
4.49
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GACTCTGCTGCTATCACCAGCATGCAAATCTCCTCGAAAAGG
Seq A exon
CACCAGCTCTACATAGCATCACCCAGCGCAGTGGCCCAGATTGCTTTACATCGCTGCCCTGCCCTAGGCCGCGCCTGCGCAGAATGCTGCTTGGCCCGTGACCCCTACTGCGCCTGGGATGGATCAGCCTGCACACGCTTCCAGCCTACTGCCAAGAG
Seq C2 exon
GCGGTTCCGGAGGCAAGACATAAGGAATGGCAACCCCAGCACCCTGTGCTCTGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016512-'24-22,'24-19,25-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(57.4=66.0)
C2:
PF0143720=PSI=FE(31.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCTGCTGCTATCACCAG
R:
CACAGGGTGCTGGGGTTG
Band lengths:
90-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]