HsaEX0057053 @ hg38
Exon Skipping
Gene
ENSG00000012171 | SEMA3B
Description
semaphorin 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr3:50275012-50275615:+
Coord C1 exon
chr3:50275012-50275053
Coord A exon
chr3:50275302-50275459
Coord C2 exon
chr3:50275560-50275615
Length
158 bp
Sequences
Splice sites
3' ss Seq
GAGCCCCTCGTGCCCCCTAGCAC
3' ss Score
4.99
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
GACTCGGCCGCTGTCACCAGCATGCAAATTTCTTCCAAGAGG
Seq A exon
CACCAGCTGTACGTAGCCTCGCGGAGCGCGGTGGCCCAGATCGCGTTGCACCGCTGCGCTGCCCACGGCCGCGTCTGCACCGAATGCTGTCTGGCGCGTGACCCCTACTGCGCCTGGGACGGGGTCGCGTGCACGCGCTTCCAGCCCAGTGCCAAGAG
Seq C2 exon
GCGGTTCCGGCGGCAAGACGTAAGGAATGGCGACCCCAGCACGTTGTGCTCCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000012171_CASSETTE3
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(8.4=100)
A:
PF0143720=PSI=PU(54.7=66.0)
C2:
PF0143720=PSI=FE(29.7=100),PF0768612=V-set=PU(12.1=65.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development