BtaEX6095187 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010138 | SEMA3B
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:HGNC Symbol;Acc:HGNC:10724]
Coordinates
chr22:50656621-50657195:-
Coord C1 exon
chr22:50657154-50657195
Coord A exon
chr22:50656773-50656930
Coord C2 exon
chr22:50656621-50656676
Length
158 bp
Sequences
Splice sites
3' ss Seq
CTGGAGCCTTATTCCCCTAGCAC
3' ss Score
3.32
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
GACTCAGCTGCTGTCACCAGCATGCAAATCTCCTCTAAGAGG
Seq A exon
CACCAACTGTACGTAGCCTCTCGCAGCGGGGTGGCCCAGATCCCGTTGCACCGCTGCGCTGCCCACGGCCGTGCCTGTGCCGAATGCTGCCTGGCACGTGACCCCTACTGTGCCTGGGATGGGGCCAAGTGCACTCGCTTCCAGCCCAGTGCCAAGAG
Seq C2 exon
GCGGTTCCGACGGCAGGACGTAAGGAACGGCGACCCCAGCACACTGTGTTCCGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010138-'23-32,'23-28,24-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(53.8=66.0)
C2:
PF0143720=PSI=FE(29.2=100),PF0768612=V-set=PU(11.2=60.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCAGCTGCTGTCACCAG
R:
CCCCGGAACACAGTGTGC
Band lengths:
98-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]