DreEX0065017 @ danRer10
Exon Skipping
Gene
ENSDARG00000011672 | sema3b
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B [Source:ZFIN;Acc:ZDB-GENE-081105-78]
Coordinates
chr8:26569974-26570498:-
Coord C1 exon
chr8:26570457-26570498
Coord A exon
chr8:26570178-26570335
Coord C2 exon
chr8:26569974-26570029
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTCTTCTGTCTCTCTCCAGCAA
3' ss Score
10.95
5' ss Seq
ACGGTACAG
5' ss Score
5.76
Exon sequences
Seq C1 exon
GACTCTTCGTCTATTATCAGTATGCAGATTTCCTCCAAACGG
Seq A exon
CAACAGCTGTATGTTGGCTCAGACACAGGTGTTGTCCAGGTGCCTCTGCACCGCTGCAGTATGTACGGTAAAGCTTGTGCCGAGTGCTGTTTGGCTCGAGATCCGTACTGCGCCTGGGACGGACACACCTGCACACGATACCTGCCAAACACCAAACG
Seq C2 exon
GAGGTTCCGGCGTCAGGATGTGAGGAACGGAGATCCTAATGCCCTCTGCTCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011672-'14-19,'14-18,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.350
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(2.9=100)
A:
PF0143720=PSI=PU(59.3=66.0)
C2:
PF0143720=PSI=FE(32.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTTCGTCTATTATCAGTATGCA
R:
GCAGAGGGCATTAGGATCTCC
Band lengths:
90-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]