MmuEX6069103 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108870922-108871378:+
Coord C1 exon
chr9:108870922-108870948
Coord A exon
chr9:108871146-108871175
Coord C2 exon
chr9:108871307-108871378
Length
30 bp
Sequences
Splice sites
3' ss Seq
TATTGATCATTGTCCTACAGGTG
3' ss Score
8.69
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
GGTCCCCCAGGTCCCCCTGGACGGCTG
Seq A exon
GTGGATGCAGGCATTGAATCCAGAGACAAG
Seq C2 exon
GGAGAGCCTGGACAAGAAGGTCCCCGAGGACCCAAGGGTGACCCTGGGCCCCCTGGAGTCTCTGGAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'59-61,'59-60,60-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(11.6=100)
A:
PF0139113=Collagen=PD(11.6=80.0),PF0139113=Collagen=PU(3.2=20.0)
C2:
PF0139113=Collagen=FE(36.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: