GgaEX1016965 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9333811-9334116:+
Coord C1 exon
chr12:9333811-9333837
Coord A exon
chr12:9333909-9333950
Coord C2 exon
chr12:9334036-9334116
Length
42 bp
Sequences
Splice sites
3' ss Seq
GTCCCCTCTCTGCCCCACAGGTG
3' ss Score
12.07
5' ss Seq
AAGGTAACA
5' ss Score
8.92
Exon sequences
Seq C1 exon
GGCCCCCCTGGACTCCCAGGACGAGCT
Seq A exon
GTGGATGTGGGGCTTGGAGGAGCGGGAGAGAAGGGTGAGAAG
Seq C2 exon
GGGGATGCTGGGGATCCGGGCGAGGATGGAGCAAAGGGGGCCAAGGGTGAGAGCGGCCCCCCCGGACTGCCGGGAGTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'51-55,'51-54,52-55=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(11.8=100)
A:
PF0139113=Collagen=PD(10.3=50.0),PF0139113=Collagen=PU(15.9=71.4)
C2:
PF0139113=Collagen=FE(41.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTCCCAGGACGAGCT
R:
TCTCACTCCCGGCAGTCC
Band lengths:
100-142
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]