RnoEX6037779 @ rn6
Exon Skipping
Gene
ENSRNOG00000020579 | Col7a1
Description
collagen type VII alpha 1 chain [Source:RGD Symbol;Acc:1311417]
Coordinates
chr8:117710541-117710992:+
Coord C1 exon
chr8:117710541-117710567
Coord A exon
chr8:117710761-117710790
Coord C2 exon
chr8:117710921-117710992
Length
30 bp
Sequences
Splice sites
3' ss Seq
AATTGATCATTCTCCCACAGGTG
3' ss Score
9.41
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGCCCCCCGGGTCTCCCTGGACGGCTG
Seq A exon
GTGGATGCCGCCCTTGAATCCAGAGACAAG
Seq C2 exon
GGAGAGCCTGGACAGGAAGGTCCCCGAGGACCCAAGGGTGACCCTGGCCCCCCTGGAGCCTCTGGAGAAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020579-'62-59,'62-58,63-59=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(13.3=100)
A:
PF0139113=Collagen=PU(1.6=10.0)
C2:
PF0139113=Collagen=FE(36.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTCCCTGGACGGCTG
R:
CTTTCTCCAGAGGCTCCAGGG
Band lengths:
89-119
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]