MmuEX6069108 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108967605-108968050:+
Coord C1 exon
chr9:108967605-108967685
Coord A exon
chr9:108967771-108967806
Coord C2 exon
chr9:108968006-108968050
Length
36 bp
Sequences
Splice sites
3' ss Seq
CTGACCTTCATGTCTCACAGGGT
3' ss Score
9.51
5' ss Seq
CCGGTGAGA
5' ss Score
8.72
Exon sequences
Seq C1 exon
GGTGACTCAGGGCCTCCTGGAGAGAAAGGAGAGCCTGGTCGACCTGGTTCCCCAGGACCTGTTGGCCCCCGAGGAAGAGAT
Seq A exon
GGTGAAGCTGGAGAGAAAGGTGACGAGGGGATCCCG
Seq C2 exon
GGTGAGCCAGGTTTGCCTGGAAAAGCAGGTGAACGTGGCCTCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'51-66,'51-64,59-66=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0139113=Collagen=PU(15.9=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGCCTCCTGGAGAGAAAG
R:
GCCACGTTCACCTGCTTTTCC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types