GgaEX0008179 @ galGal3
Exon Skipping
Gene
ENSGALG00000005811 | COL7A1
Description
NA
Coordinates
chr12:9333050-9333399:+
Coord C1 exon
chr12:9333050-9333130
Coord A exon
chr12:9333249-9333284
Coord C2 exon
chr12:9333355-9333399
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCCCCTGACCTGTGCTATAGGGT
3' ss Score
8.64
5' ss Seq
CCGGTAAGT
5' ss Score
10.91
Exon sequences
Seq C1 exon
GGTGACGCAGGGGAGCCGGGTGAGAAGGGTGAGCCAGGCAGAGTGGGTGCACCAGGACAACCAGGGCAGCGTGGCAAGGAG
Seq A exon
GGTGAGCGTGGAGAGAAGGGTGATGAAGGCACCCCG
Seq C2 exon
GGTGAAGCAGGCGTGCCTGGCAAACCTGGAGACAGGGGCCCACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005811-'46-50,'46-49,47-50
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(34.9=81.5),PF0139113=Collagen=PU(37.1=96.3)
A:
PF0139113=Collagen=FE(15.7=100)
C2:
PF0139113=Collagen=FE(20.0=100),PF0139113=Collagen=PU(16.2=73.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCGGGTGAGAAGGGT
R:
GTGGGCCCCTGTCTCCAG
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]