DreEX6023281 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40228430-40230780:-
Coord C1 exon
chr6:40230709-40230780
Coord A exon
chr6:40230553-40230597
Coord C2 exon
chr6:40228430-40228465
Length
45 bp
Sequences
Splice sites
3' ss Seq
AATATTTTGCTTTATTTCAGGGT
3' ss Score
9.48
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GGATTGGCAGGATTAAGAGGCCCTCAGGGTCCCCCAGGGCCGCCTGGGCCCCCAGGAGCTGATGGCACACCT
Seq A exon
GGTAAAGCAGGGGAGGACGGCAAATCAGGACTGCCTGGAAAGACT
Seq C2 exon
GGCGAAGATGGCGTGCCAGGAGAGGATGGTCGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720-'69-72,'69-71,70-72=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.9=20.8),PF0139113=Collagen=FE(28.0=100)
A:
PF0139113=Collagen=FE(17.1=100)
C2:
PF0139113=Collagen=FE(13.4=100),PF0139113=Collagen=PU(18.3=91.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTGGCAGGATTAAGAGGCC
R:
CTTTCGACCATCCTCTCCTGG
Band lengths:
108-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]