MmuEX6069096 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108970355-108971488:+
Coord C1 exon
chr9:108970355-108970417
Coord A exon
chr9:108970502-108970546
Coord C2 exon
chr9:108971453-108971488
Length
45 bp
Sequences
Splice sites
3' ss Seq
CCAACTCTCTGCTCCCGCAGGGA
3' ss Score
9.73
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
GGACTTCCAGGCCTTCGAGGAGAACATGGCCCCCCTGGTCCCCCTGGCCCTCCTGGAGTTCCG
Seq A exon
GGAAAGGCAGGCGATGATGGCAAACCAGGCCTGAATGGGAAAAAC
Seq C2 exon
GGAGACCCTGGAGACCCTGGAGAAGATGGAAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'70-83,'70-80,72-83=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(22.5=100),PF0139113=Collagen=PU(6.4=23.8)
A:
PF0139113=Collagen=FE(15.7=100),PF0139113=Collagen=FE(17.9=100)
C2:
PF0139113=Collagen=PD(11.2=83.3),PF0139113=Collagen=FE(14.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAGGCCTTCGAGGAGAA
R:
TCCTTCCATCTTCTCCAGGGT
Band lengths:
94-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types