DreEX0023522 @ danRer10
Exon Skipping
Gene
ENSDARG00000021720 | col7a1
Description
collagen, type VII, alpha 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2427]
Coordinates
chr6:40238074-40238849:-
Coord C1 exon
chr6:40238769-40238849
Coord A exon
chr6:40238656-40238691
Coord C2 exon
chr6:40238074-40238109
Length
36 bp
Sequences
Splice sites
3' ss Seq
TGGAACTGTTTGTTTTTTAGGGT
3' ss Score
10.71
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
GGAGAAGCAGGTGACCCAGGAGAGCACGGTGCTAAAGGCCTAAAGGGTGAAGCAGGAGCTCAAGGCACTGCAGGATCAAGC
Seq A exon
GGTCCTGAGGGGCAGCGTGGGCTACCAGGAGCCAGA
Seq C2 exon
GGTGACCCAGGTGACAGGGGCAGTCCAGGAGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021720_MULTIEX3-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(32.5=100),PF0139113=Collagen=PU(6.7=18.5)
A:
PF0139113=Collagen=FE(14.7=100),PF0139113=Collagen=FE(15.3=100)
C2:
PF0139113=Collagen=PD(8.0=50.0),PF0139113=Collagen=FE(15.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGGTGACCCAGGAGAG
R:
CTTTTCTCCTGGACTGCCCCT
Band lengths:
114-150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]