MmuEX6069112 @ mm10
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108966994-108967364:+
Coord C1 exon
chr9:108966994-108967026
Coord A exon
chr9:108967172-108967225
Coord C2 exon
chr9:108967305-108967364
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATAGCCTTTGTCACCTTTAGGGA
3' ss Score
8.59
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTCCTGGTGGTGCTGGAGCCAAAGGAGAAAAG
Seq A exon
GGAGAGGCTGGGCTCCCTGGGCCCAGAGGAGCTTCTGGAAGCAAAGGAGAGCAG
Seq C2 exon
GGCGCACCTGGATTGGCTCTTCCTGGAGATCCTGGCCCCAAAGGAGACCCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'51-66,'51-58,55-66=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.6=36.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGGTGGTGCTGGA
R:
CTGTCTCCAGGGTCTCCTTTG
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types