BtaEX6095688 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019081 | COL7A1
Description
collagen, type VII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:2214]
Coordinates
chr22:51873007-51873392:+
Coord C1 exon
chr22:51873007-51873039
Coord A exon
chr22:51873205-51873258
Coord C2 exon
chr22:51873333-51873392
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATCGTCTTTGTCACCTCCAGGGA
3' ss Score
9.84
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GGACCTGGGGGTGCTGGAGCTAAAGGAGAGAAG
Seq A exon
GGAGATATGGGCCCCCCCGGGCCCAAAGGAGCTACCGGATTCAAAGGGGAACAG
Seq C2 exon
GGCTCACCTGGCTTGGCTCTTCCTGGAGACCCTGGCCCCAAGGGAGACCCTGGAGGCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019081-'47-51,'47-50,48-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGTGCTGGAGCTAAAGGAGA
R:
TCGGCCTCCAGGGTCTCC
Band lengths:
85-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]