MmuEX6069112 @ mm9
Exon Skipping
Gene
ENSMUSG00000025650 | Col7a1
Description
collagen, type VII, alpha 1 [Source:MGI Symbol;Acc:MGI:88462]
Coordinates
chr9:108869039-108869409:+
Coord C1 exon
chr9:108869039-108869071
Coord A exon
chr9:108869217-108869270
Coord C2 exon
chr9:108869350-108869409
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATAGCCTTTGTCACCTTTAGGGA
3' ss Score
8.59
5' ss Seq
CAGGTGACT
5' ss Score
6.6
Exon sequences
Seq C1 exon
GGTCCTGGTGGTGCTGGAGCCAAAGGAGAAAAG
Seq A exon
GGAGAGGCTGGGCTCCCTGGGCCCAGAGGAGCTTCTGGAAGCAAAGGAGAGCAG
Seq C2 exon
GGCGCACCTGGATTGGCTCTTCCTGGAGATCCTGGCCCCAAAGGAGACCCTGGAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025650-'49-49,'49-48,50-49=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(6.6=36.4)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTGGTGGTGCTGGA
R:
CTGTCTCCAGGGTCTCCTTTG
Band lengths:
92-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: