MmuEX6069830 @ mm9
Exon Skipping
Gene
ENSMUSG00000034115 | Scn11a
Description
sodium channel, voltage-gated, type XI, alpha [Source:MGI Symbol;Acc:MGI:1345149]
Coordinates
chr9:119674550-119679148:-
Coord C1 exon
chr9:119678879-119679148
Coord A exon
chr9:119677467-119677520
Coord C2 exon
chr9:119674550-119674687
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTACTTCTGTTTCAGGCG
3' ss Score
9.9
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTGTTGTCAATGCCCTCATGAGTGCCATACCTGCCATCCTCAATGTCTTGCTGGTCTGCCTCATTTTCTGGCTCATATTTTGTATCCTGGGAGTAAATTTTTTTTCTGGGAAGTTTGGAAGATGCATTAATGGAACAGACATAAATAAATATTTCAACGCTTCCAATGTTCCAAACCAAAGCCAATGTTTAGTTAGTAATTACACGTGGAAAGTCCCGAATGTCAACTTTGACAACGTGGGGAATGCCTACCTTGCCCTGCTGCAAGTG
Seq A exon
GCGACCTATAAGGGCTGGCTGGACATTATGAATGCAGCTGTTGATTCCAGAGGG
Seq C2 exon
AAAGATGAGCAGCCGGCCTTTGAGGCGAATCTATACGCATACCTTTACTTCGTGGTTTTTATCATCTTCGGCTCATTCTTTACCCTGAACCTCTTTATCGGTGTTATTATTGACAACTTCAATCAGCAGCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034115-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.8=100)
A:
PF0052026=Ion_trans=FE(7.8=100)
C2:
PF0052026=Ion_trans=PD(16.1=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGTGGGGAATGCCTAC
R:
CACCGATAAAGAGGTTCAGGGT
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: