MmuEX6069830 @ mm10
Exon Skipping
Gene
ENSMUSG00000034115 | Scn11a
Description
sodium channel, voltage-gated, type XI, alpha [Source:MGI Symbol;Acc:MGI:1345149]
Coordinates
chr9:119765432-119770030:-
Coord C1 exon
chr9:119769761-119770030
Coord A exon
chr9:119768349-119768402
Coord C2 exon
chr9:119765432-119765569
Length
54 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTACTTCTGTTTCAGGCG
3' ss Score
9.9
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
Exon sequences
Seq C1 exon
GTTGTTGTCAATGCCCTCATGAGTGCCATACCTGCCATCCTCAATGTCTTGCTGGTCTGCCTCATTTTCTGGCTCATATTTTGTATCCTGGGAGTAAATTTTTTTTCTGGGAAGTTTGGAAGATGCATTAATGGAACAGACATAAATAAATATTTCAACGCTTCCAATGTTCCAAACCAAAGCCAATGTTTAGTTAGTAATTACACGTGGAAAGTCCCGAATGTCAACTTTGACAACGTGGGGAATGCCTACCTTGCCCTGCTGCAAGTG
Seq A exon
GCGACCTATAAGGGCTGGCTGGACATTATGAATGCAGCTGTTGATTCCAGAGGG
Seq C2 exon
AAAGATGAGCAGCCGGCCTTTGAGGCGAATCTATACGCATACCTTTACTTCGTGGTTTTTATCATCTTCGGCTCATTCTTTACCCTGAACCTCTTTATCGGTGTTATTATTGACAACTTCAATCAGCAGCAGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034115-'24-24,'24-23,25-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(40.8=100)
A:
PF0052026=Ion_trans=FE(7.8=100)
C2:
PF0052026=Ion_trans=PD(16.1=76.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACGTGGGGAATGCCTAC
R:
CACCGATAAAGAGGTTCAGGGT
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types