GgaEX7001698 @ galGal4
Exon Skipping
Gene
ENSGALG00000027702 | SCN11A
Description
sodium channel, voltage gated, type XI alpha subunit [Source:HGNC Symbol;Acc:HGNC:10583]
Coordinates
chr2:5329951-5332077:+
Coord C1 exon
chr2:5329951-5330205
Coord A exon
chr2:5331031-5331084
Coord C2 exon
chr2:5331940-5332077
Length
54 bp
Sequences
Splice sites
3' ss Seq
AACTCAGTGATTATTTTCAGGCA
3' ss Score
3.74
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTTGTTGTGAATGCACTTTTGGGAGCTATCCCCTCGATCTTGAACGTTTTACTCGTCTGTGTTGTCTTCTGGCTCCTGTTTAACATTGTAGGAGTAAAACTACTTGGACAAAAATTTTGGAAATGCGTGCTTAAGACAGGAGATAACAGAGAAGTTCAGAACATAAATGACTGTAGGAATTATGGTGGAAAATGGACAAACAGTTATGTAAATTTTGATCATGTTGGGATGGGATACTTGGCTCTTCTCCAGGTG
Seq A exon
GCAACTTTTAAAGGCTGGATGGACATTATGTATGCAGCAGTGGATGCGCGTCAG
Seq C2 exon
ATAGATGAACAGCCACAATTTGAGGCATGCTCAGCTATGTATTTTTACTTTGTGATTTTCATTATTTTTGGATCTTTCTTCATGCTGAATCTTTTCATTGGAGTGGTTATCAGCAACTTTAACCAACAAAGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027702-'25-26,'25-25,26-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(38.2=100)
A:
PF0052026=Ion_trans=FE(7.7=100)
C2:
PF0052026=Ion_trans=PD(15.9=76.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGATGGGATACTTGGCTCT
R:
TGCTGATAACCACTCCAATGA
Band lengths:
146-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]