MmuEX6073570 @ mm9
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:113850688-113855634:+
Coord C1 exon
chr3:113850688-113850741
Coord A exon
chr3:113854293-113854346
Coord C2 exon
chr3:113855527-113855634
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTGTACTTTACTTTCTTAGGGA
3' ss Score
7.78
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GGCCCTGCTGGGAAAGATGGGCTACCAGGACACCCTGGGCAGCGTGGTGAGACT
Seq A exon
GGATTTCAAGGCAAGACAGGTCCCCCTGGACCAGGAGGTGTGGTAGGACCACAG
Seq C2 exon
GGACCAACTGGTGAGACTGGTCCTATAGGTGAACGTGGCCATCCCGGCCCTCCTGGTCCTCCTGGCGAGCAAGGACTTCCCGGTGCTGCAGGGAAAGAAGGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'40-40,'40-39,41-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGAAAGATGGGCTAC
R:
CAGCACCGGGAAGTCCTTG
Band lengths:
138-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: