RnoEX0022762 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216988041-216995380:+
Coord C1 exon
chr2:216988041-216988094
Coord A exon
chr2:216994073-216994126
Coord C2 exon
chr2:216995273-216995380
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATAATACTTTATTTTCTTAGGGA
3' ss Score
7.23
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGCCCTGCTGGGAAAGATGGGCTACCAGGACACCCTGGACAACGTGGAGAGACT
Seq A exon
GGATTTCAAGGAAAGACCGGTCCCCCTGGGCCAGGAGGTGTGGTAGGACCACAG
Seq C2 exon
GGACCAACTGGTGAGACTGGCCCGATAGGTGAACGTGGGCATCCTGGCACTCCTGGTCCTCCGGGCGAGCAAGGACTTCCTGGTGCTGCAGGGAAAGAAGGTGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'43-46,'43-45,44-46
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGGGAAAGATGGGCTAC
R:
GCACCAGGAAGTCCTTGCTC
Band lengths:
136-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]