MmuEX6073576 @ mm10
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:114133136-114138622:+
Coord C1 exon
chr3:114133136-114133189
Coord A exon
chr3:114138400-114138453
Coord C2 exon
chr3:114138578-114138622
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTTTCTTCTTTCAGGGA
3' ss Score
12.43
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGAAAACTTGGGGTTCCAGGATTGCCGGGATATCCAGGAAGACAAGGTCCAAAG
Seq A exon
GGATCCACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAGAAAGGTGCCCGG
Seq C2 exon
GGAATTGCTGGCAAACCAGGCCCCCGGGGACAGCGTGGTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'39-48,'39-38,41-48=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.691 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(24.3=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types