MmuEX6073576 @ mm9
Exon Skipping
Gene
ENSMUSG00000027966 | Col11a1
Description
collagen, type XI, alpha 1 [Source:MGI Symbol;Acc:MGI:88446]
Coordinates
chr3:113836054-113841540:+
Coord C1 exon
chr3:113836054-113836107
Coord A exon
chr3:113841318-113841371
Coord C2 exon
chr3:113841496-113841540
Length
54 bp
Sequences
Splice sites
3' ss Seq
TGCTTCCTTTCTTCTTTCAGGGA
3' ss Score
12.43
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGAAAACTTGGGGTTCCAGGATTGCCGGGATATCCAGGAAGACAAGGTCCAAAG
Seq A exon
GGATCCACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAGAAAGGTGCCCGG
Seq C2 exon
GGAATTGCTGGCAAACCAGGCCCCCGGGGACAGCGTGGTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027966-'33-33,'33-32,35-33=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.813 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(18.7=100)
A:
PF0139113=Collagen=FE(18.7=100)
C2:
PF0139113=Collagen=PD(6.6=40.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: