HsaEX6032431 @ hg19
Exon Skipping
Gene
ENSG00000060718 | COL11A1
Description
collagen, type XI, alpha 1 [Source:HGNC Symbol;Acc:2186]
Coordinates
chr1:103444616-103449747:-
Coord C1 exon
chr1:103449694-103449747
Coord A exon
chr1:103444938-103444991
Coord C2 exon
chr1:103444616-103444660
Length
54 bp
Sequences
Splice sites
3' ss Seq
ATTTACTTTTATTATTGTAGGGT
3' ss Score
8.34
5' ss Seq
CGGGTATGA
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGAAAACTTGGAGTTCCAGGATTACCAGGATATCCAGGAAGACAAGGTCCAAAG
Seq A exon
GGTTCCACTGGATTCCCTGGGTTTCCAGGTGCCAATGGAGAGAAAGGTGCACGG
Seq C2 exon
GGAGTAGCTGGCAAACCAGGCCCTCGGGGTCAGCGTGGTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000060718-'36-39,'36-38,38-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.976 A=0.858 C2=0.981
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(16.8=100)
A:
PF0139113=Collagen=FE(16.8=100)
C2:
PF0139113=Collagen=PD(9.9=66.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGTTCCAGGATTACCAGG
R:
CGTTGGACCACGCTGACC
Band lengths:
91-145
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)