RnoEX6011208 @ rn6
Exon Skipping
Gene
ENSRNOG00000023148 | Col11a1
Description
collagen type XI alpha 1 chain [Source:RGD Symbol;Acc:2372]
Coordinates
chr2:216970398-216978989:+
Coord C1 exon
chr2:216970398-216970451
Coord A exon
chr2:216978768-216978821
Coord C2 exon
chr2:216978945-216978989
Length
54 bp
Sequences
Splice sites
3' ss Seq
GATTACTTTTCTTCTTTCAGGGA
3' ss Score
10.74
5' ss Seq
CGGGTATGG
5' ss Score
8.17
Exon sequences
Seq C1 exon
GGAAAACTTGGGGTTCCAGGATTGCCAGGATATCCAGGAAGACAAGGTCCAAAG
Seq A exon
GGATCCACTGGATTTCCTGGATTTCCAGGTGCCAACGGGGAGAAAGGTGCCCGG
Seq C2 exon
GGAATTGCTGGCAAACCAGGCCCCCGAGGACAACGTGGTCCAACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000023148-'35-39,'35-38,38-39=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.944 A=0.541 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(27.9=100)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAACTTGGGGTTCCAGGA
R:
GACCACGTTGTCCTCGGG
Band lengths:
94-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]