MmuEX6073995 @ mm9
Exon Skipping
Gene
ENSMUSG00000051278 | 4930422G04Rik
Description
RIKEN cDNA 4930422G04 gene [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127259111-127263999:+
Coord C1 exon
chr3:127259111-127259191
Coord A exon
chr3:127262489-127262548
Coord C2 exon
chr3:127263814-127263999
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTGTTTTCTAACAGGCG
3' ss Score
11.29
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTCCTATATACTCATCAAAAGATGAAGAAGTCCAAAGTGTGGCAAGATGGAGTTCTGAAGATCACTCACTTAGGCAATAAG
Seq A exon
GCGATTTTATATGATGACAAAGGAGCATGTTTGGAAAGCCTGTTTCTTAAGTGCCTTGAG
Seq C2 exon
GTGAAACCTGGAGATGACTTGGAAAGTGAGCGGTATTTAATCACAGTTGAGGAGGCTAAGGCTGTTGGAAGCAGAGCTGTTGAACCGGATGGCTCTAGAGAAGCACTGGAGTCAGGCTCAAGGACGCTTGTATCCTCCAGCAGGTCTCTTGGGTGTCAGCCCTCTGGCTTAAAAAGGAAGGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'5-3,'5-2,7-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.387
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(32.5=100)
A:
PF103824=DUF2439=FE(23.8=100)
C2:
PF103824=DUF2439=PD(33.8=43.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTGTGGCAAGATGGAGT
R:
GGTTCAACAGCTCTGCTTCCA
Band lengths:
136-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: