MmuEX6073995 @ mm10
Exon Skipping
Gene
ENSMUSG00000051278 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:MGI Symbol;Acc:MGI:1918893]
Coordinates
chr3:127556193-127561081:+
Coord C1 exon
chr3:127556193-127556273
Coord A exon
chr3:127559571-127559630
Coord C2 exon
chr3:127560896-127561081
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTATCTTGTTTTCTAACAGGCG
3' ss Score
11.29
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTCCTATATACTCATCAAAAGATGAAGAAGTCCAAAGTGTGGCAAGATGGAGTTCTGAAGATCACTCACTTAGGCAATAAG
Seq A exon
GCGATTTTATATGATGACAAAGGAGCATGTTTGGAAAGCCTGTTTCTTAAGTGCCTTGAG
Seq C2 exon
GTGAAACCTGGAGATGACTTGGAAAGTGAGCGGTATTTAATCACAGTTGAGGAGGCTAAGGCTGTTGGAAGCAGAGCTGTTGAACCGGATGGCTCTAGAGAAGCACTGGAGTCAGGCTCAAGGACGCTTGTATCCTCCAGCAGGTCTCTTGGGTGTCAGCCCTCTGGCTTAAAAAGGAAGGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000051278-'5-10,'5-4,8-10=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.387
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(32.5=100)
A:
PF103824=DUF2439=FE(23.8=100)
C2:
PF103824=DUF2439=PD(33.8=43.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAAGTGTGGCAAGATGGAGT
R:
GGTTCAACAGCTCTGCTTCCA
Band lengths:
136-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types