HsaEX0010997 @ hg19
Exon Skipping
Gene
ENSG00000138658 | C4orf21
Description
chromosome 4 open reading frame 21 [Source:HGNC Symbol;Acc:25654]
Coordinates
chr4:113541158-113553166:-
Coord C1 exon
chr4:113553086-113553166
Coord A exon
chr4:113544973-113545032
Coord C2 exon
chr4:113541158-113541346
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTGTTTTCATACAGGCA
3' ss Score
9.51
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTTCTATATACTCATCAAAAGATGAAGAAGTCAAAAGTGTGGCAAGATGGAATTCTGAAGATCACTCACTTAGGAAACAAA
Seq A exon
GCAATTTTATATGATGACAAAGGAGCATGTTTGGAGAGTCTGTTTCTTAAATGCCTTGAG
Seq C2 exon
GTGAAACCTGGAGATGACTTAGAAAGTGATCGATACTTAATCACAGTTGAAGAGGTTAAAGTTGCTGGAGCCATAGGTATTGTTAAGCAGAATGTCAATAAAGAAGCACCAGAGTTAAATTCAAGGACATTTATATCCTCTGGCCGATCTCTTGGATGTCAGCCCTCTGGCTTAAAAAGGAAGTTTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000138658_MULTIEX2-3/13=C1-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(34.2=100)
A:
PF103824=DUF2439=FE(25.0=100)
C2:
PF103824=DUF2439=PD(30.3=36.5)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTCAAAAGTGTGGCAAGATGG
R:
ACCTATGGCTCCAGCAACTTT
Band lengths:
132-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)