RnoEX0101900 @ rn6
Exon Skipping
Gene
ENSRNOG00000036980 | Zgrf1
Description
zinc finger, GRF-type containing 1 [Source:RGD Symbol;Acc:1305834]
Coordinates
chr2:231886205-231889641:+
Coord C1 exon
chr2:231886205-231886285
Coord A exon
chr2:231888076-231888135
Coord C2 exon
chr2:231889456-231889641
Length
60 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTGTTTTCTAACAGGCA
3' ss Score
11.65
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTCCTATATACTCATCAAAAGATGAAGAAGTCCAAAGTGTGGCAAGATGGAGTTTTGAAGACCACTCAGTTAGGCAGCAAG
Seq A exon
GCAATTTTATATGATGACAAAGGAACATGTTTGGAAAGCCTGTTTCTTAAGTGCCTTGAG
Seq C2 exon
GTGAAACCTGGAGATGACTTGGAAACTGACCGGTATTTAATCACAGTTGAGGAGGCTAAGGCTGCTGGAAGCAGAGCTGTTGAACCGGATGGCCCTAGAGAAGCCCTGGAGTCAGGCCCAAGGACCCTTGTATCCTCCAGCCGGTCTCTTGGGTGTCAGCCATCTGGCTTAAAAAGGAAGGCTACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000036980-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.500
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(32.5=100)
A:
PF103824=DUF2439=FE(23.8=100)
C2:
PF103824=DUF2439=PD(33.8=43.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCACTCAGTTAGGCAGCA
R:
GACTCCAGGGCTTCTCTAGGG
Band lengths:
136-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]