BtaEX6030020 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BPG1]
Coordinates
chr6:14175384-14181376:+
Coord C1 exon
chr6:14175384-14175464
Coord A exon
chr6:14179654-14179713
Coord C2 exon
chr6:14181191-14181376
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTTAATATAGGCA
3' ss Score
8.06
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GTACTATATACTCATCAAAAGACGAAGAAGTCAAAAGTGTGGCAAGATGGAATTCTGAAGATCACTCACTTAGGAAACAAA
Seq A exon
GCAATTTTATATGATGACAAAGGAGGATGTTTGGAGAGTTTATTTCTTAAGTGCCTTGAG
Seq C2 exon
GTTAAACCTGGAGATGATTTAGAAAGTGATCGGTACTTAATCACAGTTGAGGAGGTTAAAGTTGCTGGAAGCACAGCTGTCAAGCAGGATGTCATTAAAGAAGCACCAGCATTAAATTCAAAGAGGTTTATGTCTTCTGGCCGATCCCTTGGGTGTCAGCCTGCTGGTTTAAAAAGGAAGTTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026936-'4-5,'4-3,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(32.5=100)
A:
PF103824=DUF2439=FE(23.8=100)
C2:
PF103824=DUF2439=PD(33.8=43.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGAAGTCAAAAGTGTGGCA
R:
CTTGACAGCTGTGCTTCCAGC
Band lengths:
144-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]