GgaEX0018138 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:58666114-58666979:+
Coord C1 exon
chr4:58666114-58666194
Coord A exon
chr4:58666302-58666358
Coord C2 exon
chr4:58666794-58666979
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCATTTATTTTTCCTTACAGGCA
3' ss Score
11.25
5' ss Seq
CAGGTATAT
5' ss Score
7.88
Exon sequences
Seq C1 exon
GTGTTGTACACTCACCAAAAAATGAAAAAATCAAAAACATGGCAAGATGGAATTCTGAAGATTAGACCTGGAGAAAATAAG
Seq A exon
GCAATCTTGCTGGATGATAAAGGACAATACTTGGAGAGTATGTTTATAAAATCCCAG
Seq C2 exon
GTGAATCCTGGAGATAATTTAGAAAGTGAACGATATCTGATCACAGTTGAAGAAGCAAAAATGAAGGAAAAATCTTGCGAAGATCAACCAAGGAAAGCTGAAGTAGTAGATGTGAATAGACGTGGTGTAAAGCCTGGAGTTCTACCTTCAAGGCATCTGTCTGTTGGCTTAAAGAGGAAGTTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012063-'1-2,'1-1,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=0.053 C2=0.355
Domain overlap (PFAM):
C1:
PF103824=DUF2439=FE(33.3=100)
A:
PF103824=DUF2439=FE(23.1=100)
C2:
PF103824=DUF2439=PD(33.3=41.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATGGCAAGATGGAATTCTGA
R:
GCTTTCCTTGGTTGATCTTCGC
Band lengths:
143-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]