MmuEX6074743 @ mm9
Exon Skipping
Gene
ENSMUSG00000028034 | Fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
Coordinates
chr3:151885048-151886329:+
Coord C1 exon
chr3:151885048-151885208
Coord A exon
chr3:151885793-151885944
Coord C2 exon
chr3:151886250-151886329
Length
152 bp
Sequences
Splice sites
3' ss Seq
CCTTTTTTTTTTTATAATAGGGC
3' ss Score
9.27
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGGTGAAACCATAAAAAGCATAAGCCAACAGTCTGGTGCAAGAATAGAACTGCAGAGAAGCCCTCCACCTAATGCAGATCCCAATATGAAGTTATTTACAATTCGGGGCACTCCACAGCAAATAGACTATGCTCGACAACTCATAGAAGAGAAGATTGGG
Seq A exon
GGCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGGGTTCCAGGTCCTCATGGGCCTCCTGGACCTCCAGGGCCGGGAACTCCAATGGGACCATACAACCCTGCACCTTACAATCCAGGACCACCTGGCCCAGCTCCTCA
Seq C2 exon
CGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCGTATCCACATTGGCAGCAACAGGCTCCTCCTGACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028034-'19-17,'19-16,20-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAAACCATAAAAAGCATAAGC
R:
CCTGTTGCTGCCAATGTGGAT
Band lengths:
226-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: