DreEX6025616 @ danRer10
Exon Skipping
Gene
ENSDARG00000029248 | fubp1
Description
far upstream element (FUSE) binding protein 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2159]
Coordinates
chr2:8857567-8858139:+
Coord C1 exon
chr2:8857567-8857727
Coord A exon
chr2:8857813-8857958
Coord C2 exon
chr2:8858063-8858139
Length
146 bp
Sequences
Splice sites
3' ss Seq
TGTATGTTTTTTTGCCATAGGGT
3' ss Score
10.05
5' ss Seq
ACAGTAAGG
5' ss Score
5.42
Exon sequences
Seq C1 exon
GTGGTGAAACTATTAAAAACATAAGCCAGCAGTCTGGAGCCAGGATAGAATTGCAAAGAAACCCTCCTCCTAATTCGGATCCTAATATAAAGATCTTCACAGTCCGTGGGTCACCCCAACAAATTGATTATGCCAGGCAATTGGTCGAGGAGAAGATAGGA
Seq A exon
GGTCCAGTTAGCCCTATGGGTGGTCCTCATGGTCCACCTGGGCCACATGGAGGACCTTCTCATGGACCTCCTGGTCCTCAGGGACCACCTGCTCCCATGGGCCCTTACAACCCTGGGCCTTATGGCCAGGGCCCACCTGGACCACA
Seq C2 exon
TGGACCCCCAGCACCATACCAACCTCAAGGCTGGGGCAATGGATACCCCCACTGGCAGCAAGGACAGCCTGATCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029248-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAACTATTAAAAACATAAGCCAGC
R:
TAGGATCAGGCTGTCCTTGCT
Band lengths:
234-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]