HsaEX6031740 @ hg38
Exon Skipping
Gene
ENSG00000162613 | FUBP1
Description
far upstream element binding protein 1 [Source:HGNC Symbol;Acc:HGNC:4004]
Coordinates
chr1:77960184-77962930:-
Coord C1 exon
chr1:77962770-77962930
Coord A exon
chr1:77960344-77960495
Coord C2 exon
chr1:77960184-77960263
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGTCATCCTTTTTTTTGTAGGGC
3' ss Score
10.24
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GAGGTGAAACCATAAAAAGCATAAGCCAGCAGTCTGGTGCAAGAATAGAACTTCAGAGAAATCCTCCACCAAATGCAGATCCTAATATGAAGTTATTTACAATTCGTGGCACTCCACAACAGATAGACTATGCTCGGCAACTCATAGAAGAAAAGATTGGT
Seq A exon
GGCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGTGTCCCAGGCCCCCATGGACCTCCTGGGCCTCCAGGGCCTGGAACTCCAATGGGACCATACAACCCTGCACCTTATAATCCTGGACCACCAGGCCCGGCTCCTCA
Seq C2 exon
TGGTCCTCCAGCCCCATATGCTCCCCAGGGATGGGGAAATGCATATCCACACTGGCAGCAGCAGGCTCCTCCTGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000162613-'28-29,'28-28,30-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGAAACCATAAAAAGCATAAGC
R:
CCTGCTGCTGCCAGTGTG
Band lengths:
226-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains