BtaEX6016939 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008926 | FUBP1
Description
Bos taurus far upstream element (FUSE) binding protein 1 (FUBP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076846]
Coordinates
chr3:66977244-66980511:+
Coord C1 exon
chr3:66977244-66977404
Coord A exon
chr3:66980193-66980344
Coord C2 exon
chr3:66980432-66980511
Length
152 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTGTCTTTTTGCAGGGC
3' ss Score
11.29
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
GGGGTGAAACCATAAAAAGCATAAGCCAACAGTCTGGTGCAAGAATAGAACTTCAGAGAAATCCTCCACCTAATGCAGATCCTAATATGAAGTTATTTACAATTCGTGGCACTCCACAGCAAATAGACTATGCTCGGCAACTCATAGAAGAAAAGATTGGT
Seq A exon
GGCCCAGTAAATCCTTTAGGGCCACCTGTACCCCATGGGCCCCATGGTGTCCCTGGCCCCCATGGGCCTCCTGGGCCTCCTGGACCAGGAACTCCAATGGGACCATATAACCCTGCACCTTATAATCCAGGACCGCCTGGCCCTGCTCCTCA
Seq C2 exon
TGGCCCTCCAGCCCCTTATGCTCCCCAAGGGTGGGGAAATGCATACCCACATTGGCAGCAACAAGCCCCTCCAGATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008926-'21-22,'21-21,22-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0001324=KH_1=PD(72.7=88.9)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGTGAAACCATAAAAAGCAT
R:
CTGGATCTGGAGGGGCTTGTT
Band lengths:
241-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]